猪基因组结构变异研究进展

结构变异（structural variation,SV）广泛分布在基因组中,并主要以缺失、插入、重复、倒位和易位的形式出现。SV可以通过不同的机制直接或间接影响基因剂量,从而导致畜禽的表型变异,甚至引起疾病。随着分子生物学的发展和新基因组技术的进步,SV在猪基因组的研究越来越多,主要包括繁殖性状、肉质性状、生长性状、毛色、疾病等。本文参考了国内外相关报道,对SV的定义、分类、形成机制、检测方法以及在猪基因组的研究进展进行综述,并对目前SV研究存在的问题提出了建议以及未来的研究趋势进行了展望。     

黔中玉米耕地土壤杂草种子库季节动态

对黔中玉米耕地土壤进行种子萌发试验,结果表明:玉米地杂草种子库共有44个物种出现,隶属16科40属。4个季节单位面积的种子萌发量Ⅰ季度8 609粒/m2>Ⅲ季度8 045粒/m2>Ⅱ季度6 491粒/m2>Ⅳ季度2 698粒/m2。狗尾草和水田碎米荠为上半年库中优势物种,下半年优势物种则为波斯婆婆纳。整体上随土壤层次的增加种子库存量相对减少,冬季活力种子萌发量最少;就物种多样性而言,种子库Shannon-W iener指数和Simpson指数均表现为Ⅱ>Ⅰ>Ⅲ>Ⅳ。     

Variation in digestibility in nine populations of perennial ryegrass (Lolium perenne) and its genetic basis

Summary Thirty five individuals from each of nine perennial ryegrass populations were sampled from set-stocked and zero-grazed swards and from an old permanent pasture. The swards were 6, 18, 30 months and 11 years old when sampled. The permanent pasture was at least 40 years old.Dry matter digestibility (DMD) and organic matter digestibility (OMD) were determined for green leaf material harvested 4 days after ear emergence. Significant differences were found between the populations, but genotypic differences were found only for OMD. The largest proportion of the total variation was due to differences between blocks. In the zero-grazed populations, DMD and OMD declined significantly with increasing sward age. This was not found for the set-stocked swards. Two sets of pair crosses, from which mid-parent, progeny regressions could be determined, were carried out.The regressions of offspring on mid-parent for set-stocked and zero-grazed swards were used to assess the presence of additive genetic variation and to estimate narrow sense heritability of DMD. The coefficients of correlation, 0.122 and 0.226 respectively, were non-significant, indicating an absence of additive genetic variation.     

Genetic organization of aromatic rice as revealed by RAPD markers: A case study in conserving crop genetic resources on farm

Summary On-farm conservation of landraces is one strategy to maintain the diversity of crop germplasm in local agro-ecosystems. The genetic structures of landraces are a key biological factor in on-farm conservation strategies. To accumulate a genetic understanding that will help establish a methodology for on-farm conservation, the genetic organization of landraces of aromatic rice in Namdinh province, Vietnam was analyzed using RAPD markers. Eighteen RAPD markers detected 38 genotypes among 320 aromatic rice samples growing at 23 sites of farmers' fields and in the experimental field that derived from 13 sites. Geographical variation was observed in the frequency of genotypes, whereas individual landraces could not be distinguished by RAPD markers. Genetic variation within a site was generally smaller than that among sites. The degree of genetic similarity of the plants in a site varied among sites, as did the number of genotypes. Changes in genetic structure over time were investigated using experimental populations each derived from approximately 30 plants from 13 farmers' fields. The differences detected by DNA markers between the genetic structural in the farmers' fields and those in experimental fields suggested that genetic drift is a major cause of these differences. The present study suggests that DNA markers are an essential means to monitor the genetic structures of heterogeneous landraces of rice, and are useful for selecting study sites for the on-farm conservation of genetic diversity as well as for successive monitoring.     

The nature of Solanum × chaucha Juz. et Buk., a triploid cultivated potato of the South American Andes

Summary The variation in Solanum × chaucha Juz. et Buk. (2n=3x=36) was studied using 114 accessions from the Potato Collection maintained by the International Potato Center. These accession represented less than 5% of the collection originally screened for ploidy. Twenty morphological characters of the tubers, inflorescences and leaves were scored. The accessions were grouped into 20 morphotypes on the basis of the tuber characters. Two-qualitative characters, red-anther tip and sky-blue flowers were diagnostic of 4 morphotypes, but the variation of the quantitative characters overlapped among morphotypes, and were of limited value. Electrophoretic separation of tuber proteins in 7.5% polyacrylamide gels generally confirmed the morphotype groupings. It is concluded that each of the morphotypes represents a single genotype, and these are named according to the International Code of Nomenclature for Cultivated Plants. The variation within S. × chaucha apparently has been restricted by its hybrid origin.     

Genotypic Variation for Cold Tolerance among Twelve Maize (Zea mays L.) Populations

The objectives of this study were (1) to ascertain the genetic differences for cold-tolerance traits in a series of diallel crosses among 12 maize populations grown in field experiments, and (2) to compare, in controlled environment rooms, the modification of various metabolic parameters of two sets of four F1 variety crosses which, according to the field experiments, differed largely in seedling early vigour (cold-tolerant [Ct] vs cold-sensitive [Cs] Fl sets). Under field conditions, cold-tolerance adaptability, as monitored by shoot dry matter accumulation, appeared genetically controlled; moreover, considerable differences existed among genotypes. Field data suggested that shoot dry weight was a good indicator of plant adaptability to periods of unfavorable cool conditions. The growth-chamber experiments showed that shoot dry weights of the two sets of hybrids (Ct vs Cs), were more uniform at the highest temperature regimes than under suboptimal temperatures. Moreover, the laboratory study indicated that the interval of time of attain a specific stage of development provided a meaningful and useful criterion for differentiating the capacity of maize plants to grow at low temperatures. Although a clear association between a particular metabolite and the capacity of plants to grow at low temperatures was not observed, it was of interest to note that the total N concentration in the shoot was significantly higher in the Ct plants compared to the Cs ones.     

Effect of tissue culture explant source on sugarcane yield components

Clonal propagation of sugarcane(interspecific hybrids of Saccharum)is conducive to spread of systemicdiseases, such as ratoon stunting disease,caused by Leifsonia xyli subsp. xyli. This important disease iscontrolled by obtaining and plantinghealthy seed-cane. In Louisiana, commercialseed-cane initially produced through tissueculture is available to sugarcane farmersand is being widely planted. Long-termacceptability of this seed-cane productionmethod depends on the production of healthyplants that do not differ significantly inphenotypic and yield characteristics fromthe clones originally selected and releasedas commercial cultivars. To determinewhether tissue culture affects yield or itscomponents, three cultivars, CP 70-321, LCP85-384, and HoCP 85-845, were compared inthree successive crops initially plantedwith stalks from three sources: plantsderived from callus culture of the leafroll above the apical meristem, directregeneration from the apical meristem, andconventional bud propagation. Stalks ofplants derived from both explant sourceswere typical of seed-cane farmers wouldpurchase for planting that had beenpreviously rogued for phenotypic variantsand increased by bud propagation.Differences in yield components amongtissue culture explant sources and budpropagated cane only occurred in CP 70-321.Stalk diameter and stalk weight were lowerand stalk population was higher for plantsderived from leaf roll callus compared tobud propagated cane. Yield components weresimilar for plants derived from an apicalmeristem and bud propagation. Individualplant phenotypic variants resulting fromsomaclonal variation were not observed inany of the cultivars derived from eitherexplant source. In summary, genotype andexplant source affected persistent, uniformphenotypic variation resulting from tissueculture that changed some yield components. However, apical meristem culture wassuitable for production of seed-cane, assugarcane derived by meristem culture ofthree cultivars did not differsignificantly from the original germplasmfor any measured yield trait.